A paper in Science, July 1, 2010, entitled "Genetic Signatures of
Exceptional Longevity in Humans," by Paola Sebastiani and colleagues
from Boston University has generated intense interst and controversy.
Below is a transcript of Dr. Topol's post on The Big Flap About
Pathway Genomics and Walgreen's.
The topic is exceptional longevity, and can we predict it. This is an
outgrowth of the Science paper by Sebastiani and colleagues, including
Thomas Perls from Boston University, [published] July 1st in Science.
This paper has been responsible for generating quite a controversy,
which we will get into in a minute. Basically, the main finding for
looking at a large group of centenarians that the New England group has
accumulated over many years and doing a genome wide association study
compared to a potpourri of controls --controls that came from the
Illumina database, controls that included children of parents who had
died in their 70s, and even a group of Parkinson’s disease patients --
so this was one of the concerns. Another one that was raised in the
post-publication phase was the problem with the chips. That is, there
were different chips that were tested, one that looked at 310,000 SNPs
and another one that looked at 670,000 SNPs. These were not used in all
the patients, so there was some lack of potential quality control
regarding the SNP markers. Nonetheless, what this group concluded in
Science was that using 150 SNPs, one could predict with 77% accuracy
whether you would live to centenarian status, which is a pretty big
jump, of course, for not only today. It is very difficult to predict
longevity. Now this has come under siege. There have been reports in the
New York Times. There was a Newsweek article that was entitled “The
Little Flaw in Longevity-Gene Study That Could Be a Big Problem.” There
are all sorts of things in the blogosphere such as “Serious Flaws
Revealed in ‘Longevity Gene’ Study” [by Daniel MacArthur]. The critical
issue, though, is whether these data will hold up to reanalysis. The
investigators will have to redo the model that predicts exceptional
longevity, taking out the SNPs that are now known to be faulty, and see
whether or not, with the replication that they had, it will all hold up.
Probably there will be some dilution of the effect, but some of the
genes that came out of this study like TOM40, which is a known major
modulator of the APOE locus adjacent to this gene, and which has already
been implicated in longevity, itself were quite striking. So, we will
have to see what this will turn out. This is quite a controversial
study. Longevity and the science of aging is an area of fascination, and
I would be interested to get your thoughts. What was really striking
was that a Wall Street Journal poll that was conducted in the days after
the Science paper asked how many people would like to know whether they
carry the gene markers for exceptional longevity, and 75%of people (who
at least read the Wall Street Journal and go onto its website and vote)
wanted to get this information.
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